Praxis Medical Insights

Est. 2024 • Clinical Guidelines Distilled

Made possible by volunteer editors from the University of Calgary & University of Alberta

Last Updated: 8/26/2025

Diagnostic Approach for Microbial Keratitis

History Taking

  • The American Academy of Ophthalmology recommends assessing ocular symptoms including pain, redness, discharge, blurred vision, photophobia, and duration of symptoms 1
  • Obtain contact lens history including wearing schedule, overnight wear, lens type, solutions used, hygiene protocol, and activities while wearing lenses (swimming, showering) 1, 3
  • Review ocular history for risk factors such as previous bacterial keratitis, trauma, dry eye, and previous ocular surgeries 4
  • Evaluate medical history including immune status, rosacea, atopy, diabetes, and history of drug-resistant infections like MRSA 5
  • Document current and recently used ocular and systemic medications 1

Physical Examination

  • Document baseline visual acuity even though it may be compromised by discomfort and inflammation 4, 5
  • Assess general appearance including skin conditions and overall hygiene 5
  • Examine facial features for conditions like rosacea or herpes zoster 5
  • Evaluate globe position, eyelids, eyelid closure, and nasolacrimal apparatus 5
  • Check conjunctival injection and chemosis 5
  • Consider corneal sensation testing when appropriate 5
  • Examine eyelids for inflammation, ulceration, meibomian gland dysfunction, and abnormalities like trichiasis or lagophthalmos 1, 4
  • Assess conjunctiva for discharge, inflammation, morphologic alterations, and foreign bodies 1
  • Evaluate cornea for epithelial defects, punctate keratopathy, and edema 1, 2
  • Evaluate cornea for stromal infiltrates, noting their location, size, shape, depth, and character of margins 4, 5
  • Evaluate cornea for ulceration, thinning, and perforation 1
  • Apply fluorescein or rose bengal/lissamine green staining to identify epithelial defects 2
  • Check anterior chamber for inflammation, including cell and flare, hypopyon, and fibrin 2
  • Examine anterior vitreous for inflammation 4
  • Assess the contralateral eye for clues to etiology 4

Laboratory Testing

  • Most community-acquired cases of bacterial keratitis can be managed with empiric therapy without cultures 2, 6
  • Smears and cultures are specifically indicated when corneal infiltrate is central, large, or associated with significant stromal involvement or melting 2, 6
  • Smears and cultures are specifically indicated when infection is chronic or unresponsive to broad-spectrum antibiotics 6
  • Smears and cultures are specifically indicated when patient has history of corneal surgeries 6
  • Smears and cultures are specifically indicated when atypical features suggest fungal, amoebic, or mycobacterial keratitis 2, 6
  • For large, central infiltrates with stromal melting or atypical appearance: obtain cultures and Gram/Giemsa stains 2
  • For post-surgical infiltrates: obtain cultures with Gram, potassium hydroxide, Calcofluor white, and acid-fast stains 2

Common Pitfalls and Caveats

  • Clinical appearance alone may be insufficient to differentiate bacterial from fungal keratitis, with cornea specialists correctly identifying the causative organism in less than 70% of cases 2
  • Hypopyon in bacterial keratitis is usually sterile; aqueous or vitreous taps should not be performed unless there is high suspicion of endophthalmitis 2
  • Distinguishing between epithelial staining and pooling of stain in areas of corneal thinning is important; pooling can be wicked away with a cotton swab or irrigation 2
  • Prompt diagnosis and treatment are essential for good visual outcomes, as untreated or severe bacterial keratitis may progress rapidly to corneal perforation 3