Praxis Medical Insights

Est. 2024 • Clinical Guidelines Distilled

Made possible by volunteer editors from the University of Calgary & University of Alberta

Last Updated: 8/28/2025

Diagnostic Approaches for Malabsorption

Initial Assessment

  • Confirmation of true diarrhoea through stool inspection and measurement of stool weight is recommended before pursuing extensive malabsorption workup, as recommended by the European Society of Gastroenterology 1
  • Initial laboratory investigations should include full blood count, erythrocyte sedimentation rate, electrolytes, liver function tests, iron studies, vitamin B12, folate, and thyroid function, according to the European Society of Gastroenterology 1
  • The European Society of Gastroenterology recommends antiendomysium antibody testing as the preferred first-line test for coeliac disease, the most common small bowel enteropathy in European populations 1, 2
  • If small bowel malabsorption is suspected and serological tests are negative, the European Society of Gastroenterology suggests upper gastrointestinal endoscopy with distal duodenal biopsies should be performed 2
  • For suspected pancreatic insufficiency, the European Society of Gastroenterology prefers newer specific tests such as stool elastase over older methods 3

Fat Malabsorption Assessment

  • The European Society of Gastroenterology discourages the use of quantification of three-day faecal fat due to its poor reproducibility, unpleasantness, and non-diagnostic value 3
  • Breath tests for fat malabsorption (using 14C-triolein or 13C-labeled mixed triglyceride) have low sensitivity for mild/moderate fat malabsorption but may serve as alternatives to faecal fat collection where available, as suggested by the European Society of Gastroenterology 3

Carbohydrate Malabsorption Assessment

  • Carbohydrate malabsorption is predominantly associated with mucosal disease or dysfunction, according to the European Society of Gastroenterology 4
  • Hydrogen breath tests offer better diagnostic value for specific carbohydrate intolerances than stool pH or reducing substances, as recommended by the European Society of Gastroenterology 1